Thanks,
It seems to work properly (now TPEF files in seconds are accepted), although I
noticed the last volume could not be excluded (TP 267 out of 90 volumes i.e. 0
to 89, TR 3s still fails).
As far as I don't know what lies behind Freesurfer Time-point exclusions, I
hypothesize this could
Hello,
I am getting the following error when I try to load an FSGD file in
tksurfer. The stats were processed using a custom design matrix without
error and I am able to view the results.
FSGD file doesn't contain a PlotFile entry.
Error loading GDF
/scratch/freesurfer/subjects/adina/descic39_all
Jerry,
Your .fsgd file is probably missing a PlotFile line. Add this before
the DesignMatFile line:
PlotFile /path/to/my/y.mgh
where the y.mgh file is the one containing the concatenation of your
input data (in qdec, its automatically generated and called y.mgh).
The fsgdPlot.tcl problem is (w
Thanks for such a prompt reply, Nick!
I realize now that the root issue is probably that I did not use the --fsgd
flag when I ran mri_glmfit (because it conflicted with the --X flag, which I
used to specify a custom design matrix). So, the y.fsgd file was not created
in the glmdir.
The y.fsgd file
I don't know about the vtk solution, but if you can make a label out
of your patch, I do have a new version of mri_label2label which will
assign the vertex numbers. Would that work? I've put a version in
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_label2label
Specify --pai
You are correct (had a >= instead of >). I've put the corrected file here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/flac_customize.m
Copy it into $FREESURFER_HOME/fsfast/toolbox
doug
On Sun, 13 Apr 2008, Lionel zorzevic wrote:
Thanks,
It seems to work properly (now T
