Been running Freesurfer on Linux 2.0 GHz machines. I like the results but need
to increase through-put for a 500 subject run. Got the money for a Mac Pro
with 8 cores and 16 GB ram. Is it likely that I will get an eight times gain
in through-put? Just need some kind of benchmark to determin
You won't gain 8 times in one analysis. But you can run 8 analysis in
roughly the same time you would do one.
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Dabbs (Kevin)
Sent: quinta-feira, 21 de fevereiro de 2008 13:43
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] M
Dear all,
We are trying to extract a cerebral white matter mask from the
Freesurfer output.
We are currently using the aparc+aseg file in order
to do this, however we realized that the white matter mask (taken by
choosing the voxels with values equal to 2 and 41) doesn't correspond
exactly to
HI Antonio,
You can use mris_convert to get the surfaces into ascii format. ie:
mris_convert lh.white lh.white.ascii
If you look at the file you see the following:
#!ascii version of lh.white
126302 252600
-7.101086 -100.61 -1.796945 0
-7.231718 -99.740860 -1.915022 0
.
.
-7.355780 53.0
Hi,
I am trying to run an MPRRAGE scan through the first step of autorecon-all,
but get the following error message:
Iteration 1 Thu Feb 21 14:57:06 PST 2008
nu_correct -clobber ./tmp.mri_nu_correct.mni.28541/nu0.mnc
./tmp.mri_nu_correct.mni.28541/nu1.mnc
spawn: exec of nu_estim
Hi Antonio,
mris_fill will fill the interior of the surface, but this will include
things like ventricles, thalamus, etc You could take this voxels out
using the aseg if you want. The surface formats are documented on the wiki
I think, but you might be better off just using mris_convert to
