Re: [Freesurfer] ReconAllDevTable

2007-11-02 Thread Allison Stevens
Thanks, Mike. I'll work on this. Allison On Fri, 2 Nov 2007, Michael Harms wrote: Hello, Just a couple miscellaneous items/suggestions regarding the very helpful ReconAllDevTable: 1) The entry for -inflate2 currently indicates that ?h.white is the input file. This should be ?h.smoothwm inste

Re: [Freesurfer] Correcting surfaces - is this really bad?

2007-11-02 Thread Bruce Fischl
Hi Claudia, it's impossible to tell from these images. Can you include one with surfaces over the norm.mgz? Not sure if the MTL wm should be connected or not. In general you need to look at the MR to decide, don't worry about little bumps in the inflated. cheers, Bruce On Fri, 2 Nov 2007

[Freesurfer] ReconAllDevTable

2007-11-02 Thread Michael Harms
Hello, Just a couple miscellaneous items/suggestions regarding the very helpful ReconAllDevTable: 1) The entry for -inflate2 currently indicates that ?h.white is the input file. This should be ?h.smoothwm instead. 2) It might be helpful to add a line to the -skullstrip stage indicating the 'mri

[Freesurfer] Freesurfer FAQ

2007-11-02 Thread Pedro Paulo Oliveira Jr
Hi, I started the Wiki Page on FreeSurfer FAQ: http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions_2fFAQ Any corrections and suggestions are welcome! I think we can avoid some questions to the list if we increase the FAQ. Regards Pedro Paulo Oliveira Jr.

Re: [Freesurfer] Freesurfer FAQ

2007-11-02 Thread Bruce Fischl
great, thanks Pedro Bruce On Fri, 2 Nov 2007, Pedro Paulo Oliveira Jr wrote: Hi, I started the Wiki Page on FreeSurfer FAQ: http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions_2fFAQ Any corrections and suggestions are welcome! I think we can avoid some questions to the list if we i