Re: [Freesurfer] convert mnc->analyze->mgz

Hi, The problem was Neurolens' display of .mgz files. mri_info of P.mnc and P.mgz is the same, and the display in Scuba is correct. Thanks Bruce and Doug you for your help! (Note for Olivier: Scuba's display [at least in my computer] is radiological, i.e., negative X coordinates are to the righ

[Freesurfer] within group contrast vector

Hello. I am trying to do a within group analysis looking at the effect of cognitive performance on cortical thickness, controlling for age and gender. I only have one class declared and my variable of interest is listed as the first variable in the FSGD file (with age and gender second and third).