Re: [Freesurfer] Conversion to Minc Line OBJ

2007-07-13 Thread Bruce Fischl
sorry, I don't think we've ever dealt with these MINC formats. Bruce On Fri, 13 Jul 2007, jorge luis wrote: Hello all I would like to convert a freesurfer triangular surface (ASCII or binary) to Minc Line OBJ file format. I know how to convert to Minc Polygons OBJ file format, but it is not

Re: [Freesurfer] control points

2007-07-13 Thread Bruce Fischl
the first mri_normalize is really only for the talairaching and the skullstrip, so if those worked fine you don't need to. You could start at the ca_normalize again I suppose, but of course it will take a while :). On Thu, 12 Jul 2007, Don Hagler wrote: So then for redoing a recon with contro

[Freesurfer] Conversion to Minc Line OBJ

2007-07-13 Thread jorge luis
Hello all I would like to convert a freesurfer triangular surface (ASCII or binary) to Minc Line OBJ file format. I know how to convert to Minc Polygons OBJ file format, but it is not useful for my application. I need a conversion to the Lines OBJ format. Any help is welcome In advance thank you

RE: [Freesurfer] add the gray matter

2007-07-13 Thread Allison Stevens
Xin, You do not have to correct the pial surface for that area - these surfaces do not affect the aseg.mgz. You will often see the surfaces in the hippocampus/amygdala regions as inaccurate, however your aseg will look fine. Allison On Fri, 13 Jul 2007, Wang, Xin wrote: This is an example o