Is there a way to re-do the generation of the ribbon but generate it
with a smaller voxel size? I've already had success resampling the
T1.mgz to 0.25mm and using it as a template for mri_surf2vol with --
mkmask and --fillribbon, but the problem is that only projects out
from the vertices,
Hi,
How many parts consisted of the occipital lobe in freesurfer's ?h.aparc.stats
file and what the name of this parts in this file?
Thank you!
[EMAIL PROTECTED]
2007-05-05
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Hankee,
The parcellation unit mapping to the lobes is found at the bottom of
this page:
http://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation
The occipital lobe consists of:
Lateral Occipital
Lingual
Cuneus
Pericalcarine
Nick
On Sat, 2007-05-05 at 17:22 +0800, hankee wrote:
Hi David,
there are two issues here. One is a known bug in which the ribbon isn't
filled properly. This has been fixed by Gheorghe Postelnicu and Nick can
post you a new version. The resolution is a different issue. Gheorghe: will
your code handle generating higher resolution versions of the r
Hello-
I am new to Freesurfer and Matlab.
I have Matlab 7.4.0 installed on an Intel Mac.
I just installed Freesurfer.
Now when I start Matlab I get the following warnings:
Warning: Name is nonexistent or not a directory: /matlab.
In path at 110
In startup at 4
In matlabrc at 255
Warning: Name i
Robert,
When freesurfer is first started after installation, it adds some lines
to your ~/matlab/startup.m file to add the freesurfer matlab files to
the matlab paths. But the way those lines are written now, it assumes
that the FREESURFER_HOME environment variable is always set, and doesnt
check
That sounds great, of course!
Is mris_volmask a new script? It doesn't seem to be present in my
installation, which I downloaded last week. Where can I get that
program?
When I fed a higher-resolution volume as template to mri_surf2vol
with --fillribbon, it actually worked just fine, exc
On Sat, 2007-05-05 at 18:13 -0500, David Perlman wrote:
> That sounds great, of course!
> Is mris_volmask a new script? It doesn't seem to be present in my
> installation, which I downloaded last week. Where can I get that
> program?
David,
You can get both of these here:
ftp://surfer.nm
Paul,
As far as I know, Freesurfer will not work with glibc-2.4, as we have
glibc-2.3 on our build systems.
You might be able to get away with installing glib-2.3 on your system,
but I really don't know if it is safe to do this (without messing-up
your entire system, maybe their support staff k
On May 5, 2007, at 8:37 AM, Gheorghe Postelnicu wrote:
PS: this might take a couple of days, as I can foresee small technical
problems occurring with the resolution increase.
Speaking of small technical problems: I manually increased the
resolution of brain.mgz and orig.mgz (I read in two d
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