I have a quick question about an error we are getting with FS 3.0.5 when
we are using tkmedit as described in the tutorial to display the
segmentations overlaid on the T1.
tkmedit good_output brainmask.mgz lh.white -aux T1.mgz -aux-surface rh.white
-segmentation aseg.mgz
The first error seem
This should work:
tkmedit good_output brainmask.mgz \
lh.white -aux T1.mgz \
-aux-surface rh.white \
-segmentation mri/aseg.mgz \
$FREESURFER_HOME/FreeSurferColorLUT.txt
On Thu, 2007-04-12 at 16:54 +0100, Morgan Hough wrote:
> I have a quick question about an error
Folks:
We see that parcellation has insula labelled as "unknown". Is this by
design and if so is there a discussion of the rationale?
Thanks,
Graham
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Hi Graham,
The insula has intentionally not been labeled in the parcellation atlas.
At the time the atlas was developed, we did not have a working definition
of the insula and thus in order to maintain the anatomic accuracy, decided
against making a label for it.
Best,
rahul
> Folks:
>
> We see
Thanks Nick,
That did it. Can I update the wiki page with this change?
Cheers,
-Morgan
Nick Schmansky wrote:
This should work:
tkmedit good_output brainmask.mgz \
lh.white -aux T1.mgz \
-aux-surface rh.white \
-segmentation mri/aseg.mgz \
$FREESURFER_HOME/Free
