I am working on running some scans through FreeSurfer. I have scans at both
0.5mm and 0.8mm that have all been skull stripped and N3 corrected. The images
have good contrast in general and specifically are fairly good in the
subcortical regions. I am skipping a bunch of the FreeSurfer pipelin
Right, but is there a way I can fix the subcortical structures so that I can
get accurate measures of them?
-Eric
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wed 8/9/2006 12:29 PM
To: Faden, Eric (NIH/NIMH) [F]
Cc: Freesurfer Mailing List
Subject: Re: [Freesurf
How do you want to measure them? For example when we generate (human)
subcortical segmentations we do *not* use the output of mri_normalize - it
is only for cortical.
On Wed, 9 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote:
Right, but is there a way I can fix the subcortical structures so that I
Hi Eric,
that's what it's supposed to do. It's really not a bias correction in the
way N3 is - it's more of a filtering for the purpose of cortical
segmentation.
cheers,
Bruce
On Wed, 9
Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote:
I am working on running some scans through FreeSurfer. I
I was going to create surfaces and then export them to Caret to use the Atlas
made for Caret.
-Eric
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Wed 8/9/2006 12:35 PM
To: Faden, Eric (NIH/NIMH) [F]
Cc: Freesurfer Mailing List
Subject: RE: [Freesurfer] Non Human P
I'm still confused. The surfaces will be valid, so Caret should be happy,
no?
On Wed, 9 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote:
I was going to create surfaces and then export them to Caret to use the Atlas
made for Caret.
-Eric
-Original Message-
From: Bruce Fischl [mailto:[EMAI
