Lars,
The mris_preproc script uses the ?h.thickness files under the surf
directories.
N.
On Fri, 2006-07-21 at 06:55 +0200, Lars M. Rimol wrote:
> Hi,
> When one runs mris_preproc with e.g. -meas thickness, does it get the
> thickness information from the files in the stats directory within
> ea
Hello,
I read in the archive that you were planning on releasing two new atlases
(for MP-RAGE and FLASH) last year. Were those (or even newer ones)
distributed? I have some FLASH sequences I want to run. Thanks!
-Derin
___
Freesurfer mailing list
>From mris_preproc --help :
--meas surfmeasure
Use subject/surf/hemi.surfmeasure as input. For use with --s, --fsgd,
or --f. Implies --srcfmt curv.
Lars M. Rimol wrote:
Hi,
When one runs mris_preproc with e.g. -meas thickness, does it
get the thickness information from the files in t
Hi Derin,
we actually made enough progress on the cross-sequence segmentation
problem that we decided to just go with the mp-rage atlas. It works quite
well these days.
cheers,
Bruce
On Fri, 21 Jul
2006, Derin Cobia wrote:
Hello,
I read in the archive that you were planning on releasing
Kevin has changed the way freesurfer writes labels. Previously, the
coordinates were from the orig surface. From now on (in the development
distribution) they will correspond to the white surface. As Kevin
points out, the surface from which the coordinates were derived will be
in the first lin
recon-all exited with the following error. Running on
a Powermac G5 with 1G ram. Any ideas?
thanks,
Rutvik
-
Fix Topology rh Thu Jul 20 13:29:52 CDT 2006
/usr/local/freesurfer/subjects/2628/scripts
mris_fix_topology 2628 rh
reading input surface
/usr/l
Hi Rutvik,
we normally recommend 2G. The problem here though is something big
- probably either the skull or the cerebellum attached to your surfaces.
You'll need to find and detach it (the "136542 ambiguous faces found in
tessellation" is way too many, and the # of vertices and faces (191807,
Hi Rutvik,
Have you looked at your surfaces, is there a problem with the rh that you
may need to fix manually before trying the topology fixer again?
Jenni
On Fri, 21 Jul 2006, Rutvik Desai wrote:
recon-all exited with the following error. Running on
a Powermac G5 with 1G ram. Any ideas?
Rutvik,
Can you send the entire recon-all.log?
thanks,
Nick
On Fri, 2006-07-21 at 15:15 -0400, Rutvik Desai wrote:
> recon-all exited with the following error. Running on
> a Powermac G5 with 1G ram. Any ideas?
>
> thanks,
> Rutvik
>
> -
> Fix Top
