That code snippet is what we use. There is an adjustment for the average
surface because it has much less surface area than an individual.
doug
> Hi Lars,
>
> I think the formula is:
>
> fwhm = (2.3*sqrt(niter*2/pi));
>
> Doug's in Florence, so may not reply right away. I think there's also a
>
Yes, I did implement Moo's smoother. The problem was that it was
impossible to comute the final fwhm based on the number of iterations, so
it was not very useful.
doug
> thanks Don,
>
> one warning: Doug implemented Moo Chung's smoothing and we didn't find
> quite the same results he reported. T
Hi, some of my subjects crash due to memory-failure way into the
recon-all stream. Is there any way I can resume the processing stream
from where it crashed without having to write all the individual
commands for the rest of the stream? For example, if my subject crashed
during autorecon2 -cal
Martin,
There isn't one command to do this, but sometimes it is easier to run things
piece-wise using the -no flags. To rerun something starting at
-calabel you could use:
Recon-all -autorecon2 -nogcareg -nocanorm -nocareg -nocareginv -normneck
-noskull-lta -s
Jenni
-Original Message-
Hi Sarah,
Why are you using this script – what
are you trying to do? I wrote this for Rahul with one purpose in mind, it
might be that there is a better way for you to do what you want.
Jenni
From:
[EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Sarah J Gree
I'm running autorecon2 and i forgot to turn off the setting on my
computer that automatically stalls any processes that are going at the
time and asks for a log-in password when the computer sits idle for a
while. I logged back in and it appears autorecon2 has stalled because
of this. The comman
there are options to recon-all to run any set of individual steps, but
this seems more trouble than it's worth. Just rerun it would be my
advice.
Bruce
On Tue, 13 Jun 2006 [EMAIL PROTECTED] wrote:
I'm running autorecon2 and i forgot to turn off the setting on my
computer that automatically st
Thank you, Don. However, I try your code and matlab tells me 'Undefined function or variable 'fs_fread3''. Could you post other matlab function which are used by your 'fs_read_surf.m' and ' fs_find_neighbors.m'? RonDon Hagler <[EMAIL PROTECTED]> wrote: >From: "R. Chen" >To: freesurfer@nmr.mgh.ha
Nam,
Are you using Linux Fedora Core and an NVidia graphics
card? If so, then I have seen a problem where just a snippet
of a surface is displayed in tksurfer. The solution is to
upgrade the nvidia driver. You will have to go to the
nvidia web site to get that driver.
Nick
> Hi all,
>
> I've
my terminal screen has been sitting on this for about an hour...is this
normal or does it look like something is stuck?
pass 1 of 1
setting smoothness coefficient to 0.01
blurring input image with Gaussian with sigma=2.000...
pct change decreased
pct chan
that's the (not very informative) output of the nonlinear volume morph.
It can take a day depending on your hardware, so expect it to go on for a
while. I'll try to make the output a bit more interesting.
On Tue, 13 Jun
2006 [EMAIL PROTECTED] wrote:
my terminal screen has been sitting on th
This is normal. mri_ca_register can take 10 hours. To see if it is still
running, open another terminal and type top, you should see all the
running processes. Check
http://surfer.nmr.mgh.harvard.edu/fswiki/recon_2dall to see approximate
run times for each step.
Mike
[EMAIL PROTECTED] wrote:
Hi Ron,
"fs_fread3" is actually just what I renamed the fread3.m found in
$FREESURFER_HOME/matlab.
I actually made no changes; just wanted my own self-contained set of matlab
scripts. Anyway, here it is:
%
function [retval] = fs_fread3(fid)
% [retval] = fd3(fid)
%
Hi,
I have three questions:
1) Where can I find information on what the different output files of mri_glmfit represent, i.e.
ar1.mgh
eres.mgh
rstd.mgh
rvar.mgh
These can all be plotted (Load Overlay) since they are .mgh files but
they seem to rarely show any blobs (except with extremely liberal
th
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