[Freesurfer] edit surfaces combined with MRI

2006-05-08 Thread Michael Rullmann
hey, i used mri_watershed to produce different surfaces of the brain such as inner/outer skull, outer skin and brain. often the produced surfaces aren't totally correct. tkmedit shows me the surfaces and the MRI at the same time. now i want to edit the shown surfaces with tkmedit. is it possib

Re: [Freesurfer] fill stats

2006-05-08 Thread Kevin Teich
Unless Doug has a tool for this, then no; it can't be done within tksurfer. Sorry. On Thu, May 04, 2006 at 06:16:31PM -0400, Chris Baker wrote: > > Yes- we're trying to select labels based on negative regions. If > there's no way to do this, is there a way to change which is the > positive an

Re: [Freesurfer] fill stats

2006-05-08 Thread Doug Greve
sorry, I think I missed the first part of this. What are you trying to do? Kevin Teich wrote: Unless Doug has a tool for this, then no; it can't be done within tksurfer. Sorry. On Thu, May 04, 2006 at 06:16:31PM -0400, Chris Baker wrote: Yes- we're trying to select labels based o

Re: [Freesurfer] Noncompletion of autorecon2

2006-05-08 Thread Bruce Fischl
1. yes, it should be near the end. 2. no, there's no way for us to tell. On Mon, 8 May 2006, anthony gallo wrote: Hello, I am having some trouble. I have all of the left hemisphere data that autorecon2 makes but not all from the right hemisphere. I have 2 questions: 1. If freesurfer encoun

[Freesurfer] Noncompletion of autorecon2

2006-05-08 Thread anthony gallo
Hello,   I am having some trouble.  I have all of the left hemisphere data that autorecon2 makes but not all from the right hemisphere.  I have 2 questions:1.  If freesurfer encountered a problem and ended with an "error" would that error appear at the end of the recon-all log? 2.  If the computer

[Freesurfer] autorecon2 on rh only

2006-05-08 Thread anthony gallo
Can you please tell me the command line for running recon-all autorecon2 on only the right hemisphere?  It isn't entirely clear to me from the wiki. I appreciate it, Anthony ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.h

Re: [Freesurfer] autorecon2 on rh only

2006-05-08 Thread Doug Greve
add -hemi rh to the cmd line anthony gallo wrote: Can you please tell me the command line for running recon-all autorecon2 on only the right hemisphere?  It isn't entirely clear to me from the wiki. I appreciate it, Anthony ___ Freesurfer maili