Hi,
Saw some discussion last week regarding problems with FreeSurfer on a
64 bit FC5 system. I am planning on upgrading from 32-bit FC4 to 64-bit
FC5 at the end of this week, and am wondering if the problem was an
isolated incident or if I am in for alot of work?
Heck, I started my career in
Can you send your analysis.dat and analysis.info?
Jenn Segawa wrote:
My command line is "selxavg-sess
-sf sessid -df sesspar -analysis funcanal"
On 4/25/06, Doug Greve <[EMAIL PROTECTED]>
wrote:
Sorry, what's your command-line again?
Jenn Segawa wrote:
Hello all,
I
Glenn,
Your timing is right. I am working on building/testing freesurfer on
FC5 this week, and will post the results.
Nick
On Wed, 2006-04-26 at 11:46 +, Glenn Lawyer wrote:
> Hi,
>
> Saw some discussion last week regarding problems with FreeSurfer on a
> 64 bit FC5 system. I am planning o
Dear all,
I posted a message yesterday regarding the same problem,
didn't get much help, hoping to get some help today. I am running Red
Hat Enterprise Linux 3, tried to install Freesurfer CentOS4, when I try
to access the SetUpFreeSurfer.csh file with the "source" command, I get
the err
Hi Binu,
can you send us the complete screen output from what you tried?
thanks,
Bruce
On Wed, 26
Apr 2006, Binu Thomas wrote:
Dear all,
I posted a message yesterday regarding the same problem,
didn't get much help, hoping to get some help today. I am running Red
Hat Enterprise Lin
Also, try enabling command echoing first, like this:
set echo=1
source $FREESURFER_HOME/SetUpFreeSurfer.csh
this will print-out details of the script as it runs.
On Wed, 2006-04-26 at 12:27 -0400, Bruce Fischl wrote:
> Hi Binu,
>
> can you send us the complete screen output from what you t
Thanks for the reply! Here is a detail of all that I did. I downloaded
the RH9 version of the software to my /usr/local directory and installed
it with the "tar xzvf" command. I then changed the shell to tcsh and
then the rest of the output is as follows:
[EMAIL PROTECTED] ~]# set echo=1
[EMAIL PR
Remove the angle brackets from the pathname, that is, the < and > chars.
In Unix, these are the redirection commands, and not valid pathname
characters.
So, type this:
setenv FREESURFER_HOME /usr/local/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.csh
On Wed, 2006-04-26 at 11:42 -0500,
Hello, Our scanner outputs data so that the different orientations (sagittal, coronal) are not actually those orientations. For example: the "sagittal view" from our scanner is seen when using the horizontal view in tkmedit. And the sagittal view button produces the coronal view. How can this b
Can you give us more details on exactly what you're doing? Are you reading
the dicoms directly? Converting them first? Viewing them with tkmedit?
On Wed, 26 Apr 2006, adam walczak wrote:
Hello,
Our scanner outputs data so that the different orientations (sagittal, coronal) are not
actually t
Thank you very much for your help. The configuration for FreeSurfer is
done sucessfully. I have pasted the output during configuration:
[EMAIL PROTECTED] local]# setenv FREESURFER_HOME /usr/local/freesurfer
[EMAIL PROTECTED] local]# source $FREESURFER_HOME/SetUpFreeSurfer.csh
freesurfer-L
you will need to use the rh9 freesurfer distribution on rhel3, since
rhel3 appears not to contain libstdc++.so.6. also, you will need to
install libglut, as it appears to not be installed on your system.
On Wed, 2006-04-26 at 16:01 -0500, Binu Thomas wrote:
> Thank you very much for your help. T
Dear all,
Do you recomend to routinely erase the optic nerve (regardless of how
the wm surface looks), and where in the work flow do you recomend to do
it? (We do it as part of the quality control after autorecon1 now.)-- yours,LMR
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