Re: [Freesurfer] Intel Mac

2006-04-24 Thread Bruce Fischl
we haven't gotten one yet, but one of these days. Bruce On Sun, 23 Apr 2006, Ray Fix wrote: Hello, Any plans for a Mac OS X Tiger Intel release? Ray ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailm

[Freesurfer] libs and APIs ??

2006-04-24 Thread mweiss
Are there libraries included in the freesurfer-download which contain the used algorithms an data-types? If so, where can I find the according APIs? greetings M.Weiß Leipzig University of Applied Sciences Max Planck Institute for Human Cognitive and Brain Sciences ___

Re: [Freesurfer] libs and APIs ??

2006-04-24 Thread Bruce Fischl
not yet. We've been working hard to get to the point where we can post the full source and have it build using make/configure on arbitrary systems, but we aren't there yet. cheers, Bruce On Mon, 24 Apr 2006 [EMAIL PROTECTED] wrote: Are there libraries included in the freesurfer-download whi

[Freesurfer] problems converting to nii

2006-04-24 Thread Michele Perry
Hi, I am running FreeSurfer version 3.01 and am trying to convert some .mgz files to *.nii format. When I run >mri_convert in_vol.mgz out_vol.nii or >mri_convert -ot nii in_vol.mgz out_vol.nii mri_convert runs without errors but the resulting .nii file cannot be opened by AFNI. Do you know how I ca

Re: [Freesurfer] problems converting to nii

2006-04-24 Thread Doug Greve
At one point mri_convert had an error that caused it to compress all nifti files regardless of whether they had .gz extesion or not. Try converting explicitly to .gz and loading into afni. Also, what version of afni are you using? The one prior to March 06 had problems (but should work with t