Re: [Freesurfer] multiple comparision on cortex

2005-05-10 Thread Doug Greve
Thanks Moo! It will be very nice to have this built into freesurfer. doug "Moo K. Chung" wrote: > > In case anyone wish to perform a multiple comparison on the cortex, I > have written a MATLAB function that gives the threshold for t > statistic: > http://www.stat.wisc.edu/~mchung/softwares/p

[Freesurfer] occipital cuts

2005-05-10 Thread Joongnam Yang
Hi all, The freesurfer manual on occipital cuts is clear on where to cut, but does anyone have experience on where to cut, so that the flattening of the cut would look reasonable and consistent? I've tried several cuts, but whenever I tried it, the flattened surfaces look different and it is not s

Re: [Freesurfer] occipital cuts

2005-05-10 Thread Bruce Fischl
Hi Nam, for occiptial 1/3 of cortex, Anders, Marty and Roger et al. typically made one planar cut to cut off the posterior 1/3, then one cut down the fundus of the calcarine all the way anterior. cheers, Bruce On Tue, 10 May 2005, Joongnam Yang wrote: Hi all, The freesurfer manual on occipital

RE: [Freesurfer] Manual editing tips?

2005-05-10 Thread Fornito, Alexander
Hi, Just a bit confused re: Evelina's comment: " The surfaces are generated using the normalized brain volume and not strictly the segmented white matter volume, so edits on the WM volume do not arbitrarily affect the cortical thickness measures." And Bruce's comment: " the manual editing can ce