Hi Evelina,
Let's see if I understand you...
The pial and white boundaries are calculated on the intensity
normalized/motion/corrected/averaged image, irrespective of manual editing.
Then the manual editing is only done to obtain a surface representation that is
visually accurate for display of i
Hi Alex,
the manual editing can certainly effect the final surface placement. Mostly
if a large piece of wm is missed, or sometimes we edit the brain volume
directly to remove some dura that gets kept within the pial surface.
The qsphere is used to guide the topology correction, but itself is no
Hi Bruce,
So then if my euler numbers for the white and pial surfaces are okay, any tips
as to why I get the "Segmentation Fault" message when I run
mris_anatomical_stats rh thickness? Is this a problem with the initial wm
segmentation?
Thanks,
Alex
-Original Message-
F
because thickness isn't a surface - it's a scalar field (it has no
geometry information, just a list of vertex indices and thickness
values). You can only run mris_euler_number on a surface
On Mon, 9 May 2005,
Fornito, Alexander wrote:
Hi Bruce,
So then if my euler numbers for the white and pi
-Original Message-
From: Fornito, Alexander
Sent: Mon 5/9/2005 1:14 PM
To: Bruce Fischl
Cc:
Subject: RE: [Freesurfer] Manual editing tips?
That did the trick. So then the ?.thickness file contains data neede
