Hello,
In the attached image the pial surface and the wm mater surface are
crossing. Can you let me know if this should be fixed or if it will have
an effect on the parcellation steps? The whole volume is located at
/space/engram/10/users/rk_fmri_struc/Y15_102304_STRUC.
-Keyma
Keyma Prince
Massa
Thanks Xiao Han! I worked finally! Cheers (see below)
Now I have this question:
I see there is a lot of regions. How do each region correspond to specific color in the visualization? Thanks a lot!
Wan
total white matter volume = 533145 mm^3
table columns are:
number of vertices
t
So, it seems you do need to update your binaries.
The correspondence between label and color is specified by the text file
tkmeditParcColorsCMA
in the FREESURFER_HOME directory, I believe.
But after you load the annotation into tksurfer and move the cursor over
each region, the anatomical name sh
the colors are specified in
$FREESURFER_HOME/Simple_surface_labels2002.txt
cheers,
Bruce
On
Tue, 22 Mar 2005, Wan Park wrote:
> Thanks Xiao Han! I worked finally! Cheers (see below)
>
> Now I have this question:
> I see there is a lot of regions. How do each region correspond to
> specific
Hi,
I'm running Freesurfer on RedHat Enterprise linux stations and we
recently updated to version 4 of RedHat. Doing that updated our libtcl
and libtk libraries to libtcl8.4.so and libtk8.4.so. Our problem arises
because freesurfer is still looking for version 8.3 of both libraries.
Is there a
Hi all
I have a problem ( computer crash) during talairach program in recon-all
-stage1 , does this mean that There is a problem with
MINC installation or the MINC program?
Is this the software to compute the Talairach transform?
I had to do again the installation of freesurfer and it is possibl
Hi. After doing stage 1-4 with all the manual edits, I
have a fair number of surfaces that came out with an euler number of 1 instead
of 2. However, looking at the inflated surfaces, I don't see any obvious
defects. In situations like this, what would be the most efficient way to locate
the
Hi Aaron,
this was a small bug in the topology correction that I think Florent
fixed a while ago. It should have no practical effect on anything I don't
think.
cheers,
Bruce
On Tue, 22 Mar 2005, Goldman, Aaron (NIH/NIMH) wrote:
Hi. After doing stage 1-4 with all the manual edits, I have a fair
Hi Max,
check the MNI web site (or our log). I think there is an easy fix to
this. Something like:
setenv LANG en_US
or some such.
cheers,
Bruce
On Tue, 22 Mar 2005, Calabrese Massimiliano wrote:
Hi all
I have a problem ( computer crash) during talairach program in recon-all
-stage1 , does this m
