Hi,
I did manual editting for lateral ventricles, fornix, basal ganglia, optic
nerve,
as illustrated in the cortical reconstruction tutorial, for both left and
right hemispheres, and DID save them in the "wm" volume.
Then I ran "create surface", but nothing is changed.
What could have been wrong?
hi Nam-
please refrain from using the csurf interface to create surfaces.
instead, run through the command line:
recon-all -stage2 -subjid
this will create a log file($SUBJECTS_DIR/subject_name/scripts/recon-all.log)
include this with your email so we can better assist you with your
difficulti
Thanks Brian,
Does that mean csurf interface is useless for "creating surfaces" to
implement
the editting of major topological defects?
Nam.
>>> "Brian T. Quinn" <[EMAIL PROTECTED]> 01/14/05 3:22 PM >>>
hi Nam-
please refrain from using the csurf interface to create surfaces.
instead, run thro
It isn't useless but being a GUI it is less stable, and the command line
outputs a recon-all.log, at least the tail line of which you should
include with any enquiries to the freesurfer list, otherwise it is
sometimes difficult to say what caused an undesirable freesurfer result.
On Fri, 14 J
use csurf only to make edits to the wm volume. then exit. and use the
command line as i described to "create surfaces".
that does not mean csurf is useless, but since you have many questions,
this is the way i recommend you process your data until you are
self-sufficient.
thanks,
brian
On Fri,
