[Freesurfer] Missing MNI coordinates

2004-10-21 Thread Kristine Beate Walhovd
Hi I just discovered that I'm lacking the MNI coordinates in Freesurfer2004-02-18. I just updated this version with the new mri_convert and mri_watershed fix (putting these in the freesurfer/bin/Linux directory). That couldn't create this problem? Any suggestions appreciated. Thanks, Krist

Re: [Freesurfer] Missing MNI coordinates

2004-10-21 Thread Bruce Fischl
the MNI coords are only shown if the talairach.xfm exists, and if view->info->MNI coords is checked. cheers, Bruce On Thu, 21 Oct 2004, Kristine Beate Walhovd wrote: Hi I just discovered that I'm lacking the MNI coordinates in Freesurfer2004-02-18. I just updated this version with the new mri_

[Freesurfer] when I am creating the surface

2004-10-21 Thread Wan Park
I start with the filling of white matter but after a while I am receiving this massage: (...) using +/- offset search region where offset is 45. using +/- offset search region where offset is 48. /Users/wanpark/Desktop/FreeSurfer/freesurfer/bin/Darwin/mri_fill: could not find pons No such

Re: [Freesurfer] when I am creating the surface

2004-10-21 Thread Bruce Fischl
Hi Wan, you can always manually select seed points in the left and right hemisphers and in the pons and corpus callosum, then specify them in the mri_fill command line: mri_fill -lh -rh -p -cc wm filled from the subject's mri directory. The better way to do this thought is to use the MNI aut