Re: [Freesurfer] getting up and running...

2004-09-08 Thread Kevin Teich
Hello all. I'm having a problem using mri_normalize... when I run the program, it says that it can't find libtiff.3.dylib in root folder /sw. I found "fink" on the web which, when decompiled, creates /sw and a ton of libraries, but still no libtiff.3.dylib. I assume that this is part of an image pr

[Freesurfer] flattening produces invisible flatmap and viewcuts surfaces

2004-09-08 Thread Kevin DeSimone
hi -- i've been running into a problem w/ one of my surface reconstructions... i've run the subject through all the processing steps leading up the cutting and flattening. when i make my cuts, i save the new surface as ?h.full.3d i then run the flatten surface program via the csurf GUI. the proc

Re: [Freesurfer] flattening produces invisible flatmap and viewcuts surfaces

2004-09-08 Thread Bruce Fischl
something is badly wrong with your surface and/or your patch. Can you try to cut a new one and see if it's okay? On Wed, 8 Sep 2004, Kevin DeSimone wrote: hi -- i've been running into a problem w/ one of my surface reconstructions... i've run the subject through all the processing steps leadin