Res: Res: Res: [Freesurfer] Subcortical Label

2009-01-08 Thread Kelly Silva
Thanks a lot! De: Bruce Fischl Para: Kelly Silva Cc: freesurfer@nmr.mgh.harvard.edu Enviadas: Quinta-feira, 8 de Janeiro de 2009 16:07:41 Assunto: Re: Res: Res: [Freesurfer] Subcortical Label 1) tkmedit $subject norm.mgz -segmentation aseg.mgz 2) there

Re: Res: Res: [Freesurfer] Subcortical Label

2009-01-08 Thread Bruce Fischl
1) tkmedit $subject norm.mgz -segmentation aseg.mgz 2) there are editing tools in tkmedit you can use. 3) you'll need to regenerate the aseg.stats file and the aparc+aseg stuff, but if the edits aren't near cortex you don't necessarily have to. Unless you are really trying to save computer

Res: Res: [Freesurfer] Subcortical Label

2009-01-08 Thread Kelly Silva
1) I need the command line to visualize the segmentation of subcortical structures, because I want to see if the segmentation of thalamus is good. 2) If the segmentation is not good, how can I make changes manually? 3) After the changes, is it necessary to run Recon2 and Recon3 again???