Re: [Freesurfer] viewing mri_glmfit FDR corrected results

2017-07-11 Thread marco mcsweeney
Dear Doug, thank you so much for the feedback and all of your help! Best wishes Marco On Thu, Jul 6, 2017 at 1:45 AM, Douglas Greve wrote: > You can use mri_surfcluster. Set the sig.mgh as the --in file. Set --fdr > to the FDR you want. Set --subject fsaverage and set the ---hemi. Set > --a

Re: [Freesurfer] viewing mri_glmfit FDR corrected results

2017-07-05 Thread Douglas Greve
You can use mri_surfcluster. Set the sig.mgh as the --in file. Set --fdr to the FDR you want. Set --subject fsaverage and set the ---hemi. Set --annot aparc. Set --sum to the output summary file. This should give you something similar to the output of mri_glmfit-sim. On 6/29/17 4:29 PM, marco