Re: [Freesurfer] using own average subject

2012-06-05 Thread Schuster, Christina /DZNE
>>> >>>>> Hi Bruce, >>>>> >>>>> just to be sure that I understood it correctly: >>>>> >>>>> I just use make_average_subject to create my template and then I use >>>>> mris_preproc --target newtemplate an

Re: [Freesurfer] using own average subject

2012-06-04 Thread Douglas N Greve
>> >>>>> Hi Bruce, >>>>> >>>>> just to be sure that I understood it correctly: >>>>> >>>>> I just use make_average_subject to create my template and then I use >>>>> mris_preproc --target newtemplate and

Re: [Freesurfer] using own average subject

2012-06-04 Thread Bruce Fischl
e >>>> mris_preproc --target newtemplate and not further --surf-reg >>>> specification. >>>> Then after mri_glmfit --surf newtemplate ... I have my final results?! >>>> >>>> So what is the purpose of the mris_register command? >&g

Re: [Freesurfer] using own average subject

2012-06-04 Thread Schuster, Christina /DZNE
> Best wishes >>> Christina >>> >>> >>> Von: Bruce Fischl [fis...@nmr.mgh.harvard.edu] >>> Gesendet: Donnerstag, 31. Mai 2012 20:39 >>> An: Schuster, Christina /DZNE >>> Cc: freesurfer@nmr.mgh.ha

Re: [Freesurfer] using own average subject

2012-05-31 Thread Bruce Fischl
Hi Christina, the new template will already be in the same target space as fsaverage since you used the sphere.reg to create it. Just use it as a background for your group results. cheers Bruce On Thu, 31 May 2012, Schuster, Christina /DZNE wrote: Dear FreeSurfer experts, I am trying to