error is no longer
> present
>
> Andrew
>
>
>
> *From: *Darko Komnenić
> *Date: *Thursday, April 19, 2018 at 1:08 PM
>
> *To: *"Hoopes, Andrew"
> *Cc: *FS Help
> *Subject: *Re: [Freesurfer] unable to open freeview
>
>
>
> Hi Andrew,
>
>
PM
To: "Hoopes, Andrew"
Cc: FS Help
Subject: Re: [Freesurfer] unable to open freeview
Hi Andrew,
I commented out the last two lines, and the same error message still appears.
Please let me know if you have any other suggestions. Thanks!
Best,
Darko
On Thu, Apr 19, 2018 at 6:08
;
>
>
> *From: *Darko Komnenić
> *Date: *Thursday, April 19, 2018 at 6:54 AM
>
> *To: *"Hoopes, Andrew"
> *Cc: *FS Help
> *Subject: *Re: [Freesurfer] unable to open freeview
>
>
>
> An update,
>
> in the .bash_profile file, there is a line about lin
Darko Komnenić
Date: Thursday, April 19, 2018 at 6:54 AM
To: "Hoopes, Andrew"
Cc: FS Help
Subject: Re: [Freesurfer] unable to open freeview
An update,
in the .bash_profile file, there is a line about linuxbrew. Do you recommend
that I remove it? Sending the file attached.
Best,
Darko
On
If you are, there should be a file located at
>> ~/.bashrc (it’s a hidden file in your home folder)
>>
>> Andrew
>>
>>
>>
>>
>>
>> *From: *Darko Komnenić
>> *Date: *Tuesday, April 17, 2018 at 2:24 PM
>>
>> *To: *"Hoopes, Andr
at should probably
> get fixed directly. Are you only getting these unmatched errors with
> freesurfer tools? I can try to help you solve this, but I’m not quite sure
> I understand the initial problem.
>
>
>
> PS: At some point in your .bashrc is linuxbrew called? You don’t wan
Are you using a bash shell? If you are, there should be a file located at
~/.bashrc (it’s a hidden file in your home folder)
Andrew
From: Darko Komnenić
Date: Tuesday, April 17, 2018 at 2:24 PM
To: "Hoopes, Andrew"
Cc: FS Help
Subject: Re: [Freesurfer] unable to open freeview
>
>
>
> *From: *Darko Komnenić
> *Date: *Tuesday, April 17, 2018 at 1:21 PM
>
> *To: *"Hoopes, Andrew"
> *Cc: *FS Help
> *Subject: *Re: [Freesurfer] unable to open freeview
>
>
>
> Hi Andrew,
>
> OK, so here is what happened:
>
>
>
> A
called? You don’t want that
“Linuxbrew directory detected…” error in your PATH variable
From: Darko Komnenić
Date: Tuesday, April 17, 2018 at 1:21 PM
To: "Hoopes, Andrew"
Cc: FS Help
Subject: Re: [Freesurfer] unable to open freeview
Hi Andrew,
OK, so here is what happened:
After addin
ko Komnenić
> *Date: *Tuesday, April 17, 2018 at 12:36 PM
>
> *To: *"Hoopes, Andrew"
> *Cc: *FS Help
> *Subject: *Re: [Freesurfer] unable to open freeview
>
>
>
> Hi Andrew,
>
> thanks for getting back so quickly.
>
> Here are the outputs:
>
>
also be helpful if you add another “echo $PATH” line right below the
“#!/bin/tcsh -ef” in the freeview script
best
Andrew
From: Darko Komnenić
Date: Tuesday, April 17, 2018 at 12:36 PM
To: "Hoopes, Andrew"
Cc: FS Help
Subject: Re: [Freesurfer] unable to open freeview
Hi Andrew,
t;> echo $PATH
>>
>>
>>
>> and send the output over.
>>
>>
>>
>> best
>>
>> Andrew
>>
>>
>>
>>
>>
>> *From: *Darko Komnenić
>> *Date: *Tuesday, April 17, 2018 at 11:35 AM
>> *To
line right before the call to “freeview.bin $argv”:
>
>
>
> echo $PATH
>
>
>
> and send the output over.
>
>
>
> best
>
> Andrew
>
>
>
>
>
> *From: *Darko Komnenić
> *Date: *Tuesday, April 17, 2018 at 11:35 AM
> *To: *"Hoopes, And
following
line right before the call to “freeview.bin $argv”:
echo $PATH
and send the output over.
best
Andrew
From: Darko Komnenić
Date: Tuesday, April 17, 2018 at 11:35 AM
To: "Hoopes, Andrew"
Cc: FS Help
Subject: Re: [Freesurfer] unable to open freeview
Hi Andrew,
FreeSurfe
Hi Andrew,
FreeSurfer is being sourced automatically each time I open the terminal,
and I see the usual lines:
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /home/lisak/Desktop/freesurfer
FSFAST_HOME /home/lisak/Desktop/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
S
Hi Darko, how are you sourcing freesurfer? And what is the output of running
“which freeview” and “which freeview.bin”?
best,
Andrew
From: on behalf of Darko Komnenić
Reply-To: FS Help
Date: Tuesday, April 17, 2018 at 11:17 AM
To: FS Help
Subject: [Freesurfer] unable to open freeview
Dear
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