Re: [Freesurfer] synthstrip use as a Docker for all MRI files in directory

2025-04-04 Thread Hoffmann, Malte,PhD
Hi Ivan, Thank you for your interest in SynthStrip. A Dockerfile is only executed once, when you build ("compile") the container, not when you run it. You may want to consider writing a simple Python or shell script that loops over your files and calls the existing container on each. Do you ha

Re: [Freesurfer] synthstrip use as a Docker for all MRI files in directory

2025-04-03 Thread fsbuild
External Email - Use Caution There is mri_synthstrip docker container available under,https://secure-web.cisco.com/11W4d_Wgaaf2feJLcp4xvaA9s4tjGSM9qFDeWi7gtnNXn2QvU5tOJ0p2Q_6ItlcnLhABNi1c2vbNwPTo_6TgZlihuMj-LLLN3PRCAYIVtsN-0_-JX1UVRQRwEMW40ML1TJutYrsSoGh5Rr0GDW-22gaHx5UoV7ae0vzwcM