Re: [Freesurfer] surfaces from 0.5mm scan

2016-05-25 Thread Trisanna Sprung-Much
thanks Dr. Fischl, Would there be a reason as to why recon-all crashed when doing the conformation then? I got the following error in my terminal: Original Data has (0.5, 0.5, 0.5) mm size and (394, 466, 378) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data

Re: [Freesurfer] surfaces from 0.5mm scan

2016-05-25 Thread Bruce Fischl
Hi Trisanna you can use the -cm flag, but typically what we do is let recon-all "conform" the data to 1mm, then do a post-hoc surface deformation with the original highres data using mris_make_surfaces cheers Bruce On Wed, 25 May 2016, Trisanna Sprung-Much wrote: > Hi there > > My initial ema