Re: [Freesurfer] stats on masked functional data

2011-07-05 Thread Nick Schmansky
mri_anatomical_stats will do that for you. see mri_anatomical_stats --help it would be something like: mris_anatomical_stats -l ../label/lh.V1.label \ -t ./lh.beta.mgh \ -f lh.beta.stats \ my_subject_id lh note that the column name will say 'ThickAvg' and 'ThickStd', whi

Re: [Freesurfer] stats on masked functional data

2011-06-29 Thread Michael Waskom
Hi, I believe the mri_segstats program is exactly what you're looking for here. Best, Michael On Tue, Jun 28, 2011 at 5:12 PM, Bruce Fischl wrote: > Hi Ri > > Doug may have something to do this, but if not it would be easy enough > in matlab > Bruce > > > On Tue, 28 Jun 2011, Ritobrato Datta wr

Re: [Freesurfer] stats on masked functional data

2011-06-28 Thread Bruce Fischl
Hi Ri Doug may have something to do this, but if not it would be easy enough in matlab Bruce On Tue, 28 Jun 2011, Ritobrato Datta wrote: > Hello All, > > Looks like this question slipped through. > I have a functional beta value overlay as a .mgh file and a V1 label file and > I want to compu