Re: [Freesurfer] roi-to-roi functional connectivity analysis

2012-04-03 Thread Douglas N Greve
Hi Lingqiang, sorry, I thought I had responded to this earlier. There is no way to do this in FS. As you suggest, you can get the raw time courses for each ROI. There are also time courses for CSF and WM which you can regressout of each of the ROI time courses. But you'll have to do this all yo

Re: [Freesurfer] roi-to-roi functional connectivity analysis

2012-03-30 Thread Douglas N Greve
Hi Lingqiang, there is nothing set up to do this. You can use the time courses as you suggest, but this will no remove WM, CSF, etc. Those time courses are there too, so you can remove them yourself if you want. doug On 03/29/2012 03:44 PM, Lingqiang Kong wrote: > Hi Surfers, > > Has anyone done