That's a pretty old version. Can you download and install a new version?
I actually don't know that much about the interpretation of the color
wheel. Maybe Nouchine or Sari can help with this.
doug
On Fri, 2 Dec 2005, Jane Aspell wrote:
hi again
i'm still really stuck with my retinotopy an
hi again
i'm still really stuck with my retinotopy analysis as i'm not sure if my
version of paint-sess $Id: paint-sess,v 1.2 2003/08/06 00:53:50 greve Exp $
FAST Version 20031218) has a bug in it (it doesn't make the field sign map). i
originally downloaded freesurfer-20040218-Linux.tar.gz (for
hi doug
i'm not sure how to find out what the version of freesurfer is as the -all-info
command doesn't work on csurf. however, the installation tar file i originally
downloaded was called: freesurfer-20040218-Linux.tar.gz (for RedHat 9)
my paint-sess log says the version of paint-sess is:
$Id:
What version of freesurfer (and paint-sess) are you using? This was a
problem in some versions about 6 mo ago, but I thought I fixed them
all.
doug
On Thu, 24 Nov 2005, Jane Aspell wrote:
hi again
I have been proceeding with the retinotopy analysis using FsFast, following the
instructions a
variable% and 'can't read
"env(MRI_DIR)": no such variable%
i have previously run 'source Setupfreesurfer so i don't know why this is
happening.
thanks for your help
Jane
Re: [Freesurfer] retinotopy and FsFast
Stephanie McMains
Thu, 24 Nov 2005 11:51:14 -0800
The e
The eccen should go fovea=red, parafoveal=blue, and periphery = green.
If they aren't going in that order, reverse the overlay.
the polar angle should be, blue for horizontal meridian, green for
lower visual field and red for upper visual field.
Making the fs map will also fail if you don'
hi again
I have been proceeding with the retinotopy analysis using FsFast, following the
instructions at:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis
and i believe i have successfully overlaid the results on my surfaces and now
have two questions:
i wasn't able to
you should be running everything fromt the study dir. Often, your study
dir is also the parent to the sessions. When it is not, then you need
to supply a -d sesspar or -df sessparfile
doug
Jane Aspell wrote:
Ok, thanks.
It seems that the problem with finding the session came about becau
Ok, thanks.
It seems that the problem with finding the session came about because I was
running 'sfa-sess' from the 'MYSTUDY' study directory when it seems i should
have run it from the 'session parent' directory.
cheers,
Jane
In message <[EMAIL PROTECTED]> Doug Greve
<[EMAIL PROTECTED]> writes:
that's a bug in the wiki, "-s avdk" should not appear there. Rather, it
should be "-s yoursession" or "-sf sessidfile". If it cannot find the
sessions, then something is not set up correctly. Can you double check
that the sessions in the sessidfile are in the current directory?
Jane Aspell w
10 matches
Mail list logo
