Re: [Freesurfer] reg- feat2anat error-problem

2007-06-06 Thread Doug Greve
How did you check it? Can you check it with reg-feat2anat --feat Akkaya_Zuhre_1_9++.feat/ --subject akkaya --manxfm func2std doug uzay emir wrote: Hi doug the example_func to standard space registration is correct. I do not know what to do. Uzay Doug Greve <[EMAIL PROTECTED]> wro

Re: [Freesurfer] reg- feat2anat error-problem

2007-06-05 Thread uzay emir
Hi doug the example_func to standard space registration is correct. I do not know what to do. Uzay Doug Greve <[EMAIL PROTECTED]> wrote: It sounds like something has to be fixed. Is the example_func to standard space registration correct? If not, then you will need to fix

Re: [Freesurfer] reg- feat2anat error-problem

2007-06-01 Thread Doug Greve
It sounds like something has to be fixed. Is the example_func to standard space registration correct? If not, then you will need to fix it. That registration is purely FSL. doug uzay emir wrote: Hi, Orientation problem is outlined below. 1-When the target in coronal view, movable(example_fun

Re: [Freesurfer] reg- feat2anat error-problem

2007-05-28 Thread uzay emir
Hi, Orientation problem is outlined below. 1-When the target in coronal view, movable(example_func) is sagital. 2- When the target is in sagital view, movable is coronal. 3- axial view is teh same both movable and target but The problem in this situation is that there is an angle between mova

Re: [Freesurfer] reg- feat2anat error-problem

2007-05-18 Thread Doug Greve
What do you mean there was an orientation problem? If you use analyze files, then it relies on the FSL reg to std space being correct. Is it? uzay emir wrote: Thank you,it is working now. However, I have anorientation problem with automatic registration results. This problem has been mentioned

Re: [Freesurfer] reg- feat2anat error-problem

2007-05-18 Thread uzay emir
Thank you,it is working now. However, I have anorientation problem with automatic registration results. This problem has been mentioned before but i could not find any reply. I think this is something related following lines where I found it in the reg- feat2anat log file. Regards Uzay