Re: [Freesurfer] recon-all v5.2 slightly changed

2013-01-28 Thread Nick Schmansky
updated 5.2 versions for centos4_x86_64 and macos lion are here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.2.0-BETA/ an updated centos4 build (32b) will not be ready until tomorrow. n. On Mon, 2013-01-28 at 15:29 -0500, Jonathan Holt wrote: > Also, could I have a link for the cent

Re: [Freesurfer] recon-all v5.2 slightly changed

2013-01-28 Thread Jonathan Holt
Nick, it was in fact an error with missing perirhinal cortex labels in fsaverage. It did not exist, and then the process exited. Good to know it's been fixed. jon On Jan 28, 2013, at 2:48 PM, Jonathan Holt wrote: > hello all, > > Just for reference, we were having an issue with recon-all v 5

Re: [Freesurfer] recon-all v5.2 slightly changed

2013-01-28 Thread Jonathan Holt
Also, could I have a link for the centos4 of this updated version of 5.2? And is there a working 5.2 for Mac OS X, 10.7 or 10.8 specifically? jon On Jan 28, 2013, at 3:19 PM, Jonathan Holt wrote: > Nick, > > it was in fact an error with missing perirhinal cortex labels in fsaverage. > It did

Re: [Freesurfer] recon-all v5.2 slightly changed

2013-01-28 Thread Nick Schmansky
Jon, If the error is where the perirhinal labels cannot be found in the fsaverage that sits in your subjects dir, then that issue was fixed on a more recent beta 5.2. recon-all now checks if the perirhinal labels exist in the fsaverage found in the subjects dir (which might not be the case if run

Re: [Freesurfer] recon-all v5.2 slightly changed

2013-01-28 Thread Bruce Fischl
Hi Jon what were the errors? We will want to fix them prior to official release. thanks Bruce On Mon, 28 Jan 2013, Jonathan Holt wrote: > hello all, > > Just for reference, we were having an issue with recon-all v 5.2 exiting with > errors due to issues with the perirhinal cortex. We were able