.@nmr.mgh.harvard.edu] on behalf of Louis Nicholas Vinke
> [vi...@nmr.mgh.harvard.edu]
> Sent: Tuesday, May 07, 2013 12:05 PM
> To: Sudhin A. Shah
> Cc: Freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] recon-all completes without all the info..
>
> Yes, the -all flag will
Louis Nicholas Vinke
[vi...@nmr.mgh.harvard.edu]
Sent: Tuesday, May 07, 2013 12:05 PM
To: Sudhin A. Shah
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] recon-all completes without all the info..
Yes, the -all flag will run autorecon1, autorecon2, and autorecon3.
recon-all -all -i -s
Yes, the -all flag will run autorecon1, autorecon2, and autorecon3.
recon-all -all -i -s
For that uncompleted subject you have though if sounds like you just need
to run autorecon2 and 3
recon-all -autorecon2 -autorecon3 -s
On Tue, 7 May 2013, Sudhin A. Shah wrote:
> Is there 1 command lin
Is there 1 command line? I used to just run the 1 line.
On May 7, 2013, at 10:19 AM, "Louis Nicholas Vinke"
wrote:
> Hi Sudhin,
> You'll need to also run -autorecon2 and -autorecon3 in order to get surfaces
> and all the cortical/sub-cortical measures.
> -Louis
>
> On Tue, 7 May 2013, Sudhi
Hi Sudhin,
You'll need to also run -autorecon2 and -autorecon3 in order to get
surfaces and all the cortical/sub-cortical measures.
-Louis
On Tue, 7 May 2013, Sudhin A. Shah wrote:
On May 6, 2013, at 3:05 PM, Sudhin A. Shah wrote:
Hi, This is a new issue as it used to run well before.
On May 6, 2013, at 3:05 PM, Sudhin A. Shah wrote:
Hi, This is a new issue as it used to run well before.. I run recon-all ... ...
-autorecon1 - force and it completes without error but I don't have all the
files..
Attached is a screenshot. On the right is the output from a file that worked
be
