Re: [Freesurfer] recon-all -s FrSrfr_Recon exited with ERRORS

2015-10-08 Thread Julio Alberto González Torre
I had the same problem too, using VBox and running the .vdi version of FreeSurfer with no modifications. When the "recon-all" reach to the talairach phase, the program stops with this error: # > #@# Talairach Thu Oct 8 20:16:43 EDT 2015 > /media/sf_NEU

Re: [Freesurfer] recon-all -s FrSrfr_Recon exited with ERRORS

2015-08-04 Thread Z K
Hello, This is a recently discovered bug either mni related or virtual box related. The issue is that the "mri_nu_correct.mni" command will fail when executed in the VirtualBox environment on a subject whose data exists on a shared folder between the host and the virtual machine. Currently the

Re: [Freesurfer] recon-all -s FrSrfr_Recon exited with ERRORS

2015-08-04 Thread Z K
Hello, What is the contents of the $FREESURFER_HOME/build-stamp.txt file? -Zele On 08/03/2015 11:54 PM, Li, Zhihao wrote: > Hi FS experts, > > I was trying to run "recon-all" within the VirtualBox of NeuroDebian 8.0 > on a WIN8 host. The program stopped immaturely at the step of > "mri_nu_corr