Subject: Re: [Freesurfer] problem with format of CT dicoms
These dicoms are run-length encoded, which FS does not read. What you
can do is the following
cd /place/where/dicoms/are
foreach dcm (*.dcm)
dcmdrle $dcm $dcm
end
then run mri_convert, like
mri_convert -it dicom IMG10.dcm ct.mgz
I
Hi Doug,
You can use ImageJ to read in the slices and reslice them any way you want with
whatever thicknesses you want.
Regards,
Don
>
> I did this and it converts, but the slice thickness looks wrong. I don't know
> how to fix it because we always trust the slice thickness in the dicom
>
1107.5.1.4.11060.3014081213381840600011010/IMG84.dcm
> -o ct.mgz
> 3. UseSliceScaleFactor 0 (slice 0: 1)
> Segmentation fault (core dumped)
>
> Thanks so much,
> m
> ________________
> From: Borzello, Mia
> Sent: Friday, August 22, 2014 1:14 PM
&
du
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Friday, August 22, 2014 12:43 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] problem with format of CT dicoms
Hi Mia, please follow the instructions on the web site below for
submitting bug
]
> Sent: Friday, August 22, 2014 12:31 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] problem with format of CT dicoms
>
> Hi Mia, do you realize that your description of the problem is too vague
> for us to help you? If you want help in a timely fashion, please
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Friday, August 22, 2014 12:31 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] problem with format of CT dicoms
Hi Mia, do you realize that your description of the problem is too vague
Hi Mia, do you realize that your description of the problem is too vague
for us to help you? If you want help in a timely fashion, please include
more detail like the problem you ran, the command-line arguments, the
terminal output, etc. Please see the following web page for the types
informa
