Hi Amy,
Good point. You can first use mri_vol2vol to upsample to 1mm:
mri_vol2vol --mov yourROIs.nii --targ
$FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz --regheader --o
yourROIs_1mm.nii --interp nearest
then
mri_vol2surf --mov yourROIs_1mm.nii --mni152reg --hemi rh --surf white
--o rh.ROIs.
hi, of course. The result look strange too. Please see the attached file
with -mni152reg command and this transformation matrix is not for the 2mm
resolution image. lets me know if you have any other suggestion. thanks.
Amy
On Mon, Mar 2, 2015 at 12:26 PM, Thomas Yeo wrote:
> Hi Amy,
>
> Have
Hi Amy,
Have you tried the "--mni152reg" flag instead of "--reg
/usr/local/freesurfer/subjects/fsaverage/mri.2mm/reg.2mm.dat". Is the
attached picture from your original command or mni152reg flag?
p.s. Can you please reply all to the freesurfer list?
Cheers,
Thomas
On Mon, Mar 2, 2015 at 6:54 P
