Re: [Freesurfer] preproc-sess error opening tmp brain_mask

2016-04-22 Thread Douglas N Greve
both computers point to the same place, and I > can run something like fslview on both computers. > > From: Douglas N Greve > Sent: Friday, April 22, 2016 1:54 PM > To: Mcnorgan, Christopher > Subject: Re: [Freesurfer] preproc-sess error o

Re: [Freesurfer] preproc-sess error opening tmp brain_mask

2016-04-19 Thread Douglas N Greve
Can you run /mkbrainmask-sess//-debug -s FS_T1_501 //-fsd bold/ |& tee dng.log and send me dng.log ? doug On 04/18/2016 04:51 PM, Mcnorgan, Christopher wrote: > du -h /tmp/ shows 256GB available, so that doesn’t seem to be it. Is > the “not found” error telling me that a binary is not found,

Re: [Freesurfer] preproc-sess error opening tmp brain_mask

2016-04-18 Thread Mcnorgan, Christopher
du -h /tmp/ shows 256GB available, so that doesn’t seem to be it. Is the “not found” error telling me that a binary is not found, or that some expected output file is not found? I was looking for /bin/imtest and /bin/remove_ext, and those binaries indeed do not exist, but we’ve run Freesurfer on

Re: [Freesurfer] preproc-sess error opening tmp brain_mask

2016-04-15 Thread Douglas N Greve
Is your /tmp space full? On 04/15/2016 12:54 PM, Mcnorgan, Christopher wrote: > > I was hoping the developers might be able to help with a problem I'm > having with a sub-step of preproc-sess. > > > I executed the following: > > preproc-sess -s FS_T1_501 -surface self lhrh -fwhm 6 -per-run -fsd b