Re: [Freesurfer] partial FoV - registration failure

2019-02-19 Thread Greve, Douglas N.,Ph.D.
yes On 2/12/19 11:28 AM, Francesca Strappini wrote: > > External Email - Use Caution > > Thank you! Unfortunately, I don't have any whole brain scan. > I registered the template and all the runs with tkregisterfv and the I > run bbregsiter. > Now, should I just re-run selxavg3-sess? > > T

Re: [Freesurfer] partial FoV - registration failure

2019-02-12 Thread Francesca Strappini
External Email - Use Caution Thank you! Unfortunately, I don't have any whole brain scan. I registered the template and all the runs with tkregisterfv and the I run bbregsiter. Now, should I just re-run selxavg3-sess? Thanks Best Il giorno lun 26 nov 2018 alle ore 22:31 Greve, Do

Re: [Freesurfer] partial FoV - registration failure

2018-11-26 Thread Greve, Douglas N.,Ph.D.
And you only have partial field of view fmri data on that day? No whole brain localizer? Really, any whole-brain volume will do. If you do not, then you'll have to initialize the bbr registration by hand, which is a bit of a pain. You'd run something like tkregisterfv --mov template.nii.gz --ini

Re: [Freesurfer] partial FoV - registration failure

2018-11-26 Thread Francesca Strappini
External Email - Use Caution Thanks for the fast reply! Unfortunately, I have only 3 mprage scans that were collected in another day but no whole-head functional data. Il giorno lun 26 nov 2018 alle ore 22:07 Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> ha scritto: > Do you

Re: [Freesurfer] partial FoV - registration failure

2018-11-26 Thread Greve, Douglas N.,Ph.D.
Do you have any scan that was acquired at the same time that is whole head? Any scan will do. If so, you can run register-sess using the -bbr-int option (or bbregister directly). Eg, if the anatomical was acquired at the same time, then, to use register-sess, create a folder in the session fold