Re: [Freesurfer] output with input matrix size and referential

2017-08-04 Thread pierre deman-kibleur
it seems to works thanks. On Wed, Aug 2, 2017 at 6:20 PM, Douglas Greve wrote: > Try adding --to-scanner to the mris_convert command. I think you'll need v6 > > > On 8/2/17 12:02 PM, pierre deman-kibleur wrote: > > yes, it's what i wanted to say. > > On Aug 2, 2017 17:46, "Douglas Greve" wrote:

Re: [Freesurfer] output with input matrix size and referential

2017-08-02 Thread Douglas Greve
Try adding --to-scanner to the mris_convert command. I think you'll need v6 On 8/2/17 12:02 PM, pierre deman-kibleur wrote: yes, it's what i wanted to say. On Aug 2, 2017 17:46, "Douglas Greve" > wrote: what do you mean by referential? the coordinate syst

Re: [Freesurfer] output with input matrix size and referential

2017-08-02 Thread pierre deman-kibleur
yes, it's what i wanted to say. On Aug 2, 2017 17:46, "Douglas Greve" wrote: what do you mean by referential? the coordinate system of the vertex coords? On 8/2/17 4:49 AM, pierre deman-kibleur wrote: Hi, Is it possible to have the gifti output in the same referential as the orig nii file as

Re: [Freesurfer] output with input matrix size and referential

2017-08-02 Thread Douglas Greve
what do you mean by referential? the coordinate system of the vertex coords? On 8/2/17 4:49 AM, pierre deman-kibleur wrote: Hi, Is it possible to have the gifti output in the same referential as the orig nii file as well ? I tried mris_convert lh.white lh.white.gii -rl mri/orig/001.mgz but

Re: [Freesurfer] output with input matrix size and referential

2017-08-02 Thread pierre deman-kibleur
Hi, Is it possible to have the gifti output in the same referential as the orig nii file as well ? I tried mris_convert lh.white lh.white.gii -rl mri/orig/001.mgz but mris_convert doesn't have the -rl option. Regards, Pierre On Wed, Aug 10, 2016 at 2:40 PM, Iglesias, Eugenio wrote: > You can

Re: [Freesurfer] output with input matrix size and referential

2016-08-10 Thread Iglesias, Eugenio
You can always run mri_convert with the -rl (“reslice like”) flag to achieve this. Something like: mri_convert input.mgz output.mgz -rl reference.mgz -odt float If it’s a segmentation volume, you should add -rt nearest, in order to use nearest neighbor interpolation. Cheers, Eugenio Juan Eugeni