, March 1, 2017 11:36 AM
To: freesurfer@nmr.mgh.harvard.edu
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] multiple expert options files/ wm and control points
Not sure about #3, but the final white surface is created by the second
call to mris_make_surfaces. That binary is called twice
Not sure about #3, but the final white surface is created by the second
call to mris_make_surfaces. That binary is called twice, the first time
it creates the preaparc file
On 03/01/2017 09:41 AM, miracle ozzoude wrote:
> Thanks Antonin. For 3) what does " min #of neighbors which must be on
>
Thanks Antonin. For 3) what does " min #of neighbors which must be on to
retain a point/specify fill_holes threshold" mean exactly? Also, I noticed
a difference in FS v5.3 and FS v6.0 ReconAllTable for creating white matter
surface. For v5.3, ?h.white is created as one of the outputs for
mris_make_
Dear Paul,
1) You find pretty thoroughful info on expert options file here:
https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all#ExpertPreferences
2) recon-all -autorecon2-cp -autorecon3 is ok (btw -autorecon2-cp and
-autorecon2-wm runs the same commands, at least in version 6.0).
3) There is in
