Re: [Freesurfer] mri_vol2surf failed, segmentation error

2014-02-04 Thread Bruce Fischl
Hi Yang was this ever resolved? Bruce On Sun, 18 Mar 2012, Qingyang Li wrote: Hi all,I am new to the freesurfer world. I was running a pipeline where I met an error. Here is the command I run and the error message: Command: mri_vol2surf --hemi lh --noreshape --o /working_dir/SurfaceReg

Re: [Freesurfer] mri_vol2surf failed, segmentation error

2012-03-26 Thread Qingyang Li
Thank you Doug and Satra, I ran the same pipeline on another machine after I post the question and it went through with no problem... On the machine which the pipeline failed, I have freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0. And on the machine that the pipeline went through, I have free

Re: [Freesurfer] mri_vol2surf failed, segmentation error

2012-03-26 Thread Satrajit Ghosh
hi Qingyang, you can simply copy and paste the command line into the shell. cheers, satra On Mon, Mar 26, 2012 at 3:12 PM, Douglas N Greve wrote: > Can you run it outside of the pipeline to assure that it is not a > pipeline issue? > doug > > On 03/18/2012 08:54 AM, Qingyang Li wrote: > > Hi

Re: [Freesurfer] mri_vol2surf failed, segmentation error

2012-03-26 Thread Douglas N Greve
Can you run it outside of the pipeline to assure that it is not a pipeline issue? doug On 03/18/2012 08:54 AM, Qingyang Li wrote: > Hi all, > I am new to the freesurfer world. > I was running a pipeline where I met an error. Here is the command I > run and the error message: > > Command: >