>> Conte Center for the Neuroscience of Mental Disorders
>> Washington University School of Medicine
>> Department of Psychiatry, Box 8134
>> 660 South Euclid Ave. Tel: 314-747-6173
>> St. Louis, MO 63110 Email: mha...@wustl.e
ay, May 31, 2013 2:14 PM
To: "Freesurfer@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] mprage flag in recon-all
I only find flags for mri_normalize and mri_segment in recon-all, and
I have trouble reading the contents mri_normalize with a regular text
editor.
caspar
2013/5/31 Br
mri_normalize is a binary so you can't, just recon-all.
On Fri, 31 May 2013, Caspar M. Schwiedrzik wrote:
I only find flags for mri_normalize and mri_segment in recon-all, and I have
trouble reading the contents mri_normalize with a regular text editor.
caspar
2013/5/31 Bruce Fischl
Hi
chwiedrzik" <cschwie...@mail.rockefeller.edu>
Date: Friday, May 31, 2013 2:50 PM
To: "Harms, Michael" <mha...@wustl.edu>, "Freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mprage flag in recon-all
yes, but recon-all
> St. Louis, MO 63110 Email: mha...@wustl.edu
>
> From: "Caspar M. Schwiedrzik"
> Date: Friday, May 31, 2013 2:14 PM
> To: "Freesurfer@nmr.mgh.harvard.edu"
> Subject: Re: [Freesurfer] mprage flag in recon-all
>
> I only find flags for mri_normali
I only find flags for mri_normalize and mri_segment in recon-all, and I
have trouble reading the contents mri_normalize with a regular text editor.
caspar
2013/5/31 Bruce Fischl
> Hi Caspar
>
> it changes some parameters to the intensity normalization and segmentation
> to account for the lower
Hi Caspar
it changes some parameters to the intensity normalization and segmentation
to account for the lower SNR and increased CNR in the mprage. You'll need
to look in the recon-all script for the details
cheers
Bruce
On Thu, 30 May 2013, Caspar M. Schwiedrzik wrote:
Hi!
Is there more d
