Re: [Freesurfer] merge cortical and subcortical labels

2010-05-07 Thread Douglas N Greve
yes, use mri_cor2label. doug Stefan Brauns wrote: > Thank you for your immediate response. > > That will probably do it. Would I extract these labels with the > command mri_cor2label or is there an easier way? > > On Thu, May 6, 2010 at 5:30 PM, Bruce Fischl > mailto:fis...@nmr.mgh.harvard.edu>

Re: [Freesurfer] merge cortical and subcortical labels

2010-05-06 Thread Bruce Fischl
I think mri_binarize would do it, or mri_extract_label. cheers Bruce On Thu, 6 May 2010, Stefan Brauns wrote: > Thank you for your immediate response. > > That will probably do it. Would I extract these labels with the command > mri_cor2label or is there an easier way? > > On Thu, May 6, 2010 at

Re: [Freesurfer] merge cortical and subcortical labels

2010-05-06 Thread Stefan Brauns
Thank you for your immediate response. That will probably do it. Would I extract these labels with the command mri_cor2label or is there an easier way? On Thu, May 6, 2010 at 5:30 PM, Bruce Fischl wrote: > Hi Stefan, > > can't you just extract the labels you want from the aparc+aseg.mgz? > > che

Re: [Freesurfer] merge cortical and subcortical labels

2010-05-06 Thread Bruce Fischl
Hi Stefan, can't you just extract the labels you want from the aparc+aseg.mgz? cheers, Bruce On Thu, 6 May 2010, Stefan Brauns wrote: > Dear Freesurfer experts, > > I want to create a medial temporal lobe label. Is it possible to merge > subcortical and cortical labels? Do I therefore need to u