I usually can run one instance of FreeSurfer with 1GB if I use the -no-gut
flag
I have a benchmark of 4 recon-all running in a 4 Core AMD with 4GB RAM that
took only 10% more time than one recon-all alone.
2011/7/6 John Jan Drozd
> Hi Bruce,
>
> Thanks for pointing this out to me about the RAM.
Hi Bruce,
Thanks for pointing this out to me about the RAM.
I have 8 Gb of RAM. So I guess I can safely run 3 or 4 subjects simultaneously
if each subject requires 2 to 3 Gb of RAM.
Thanks,
John
Sent from my iPhone
On 2011-07-05, at 6:08 PM, Bruce Fischl wrote:
> how much ram do you have?
how much ram do you have? You'll need at least 2G/subject if not 3
On Tue, 5
Jul 2011, John Drozd wrote:
Hi Bruce,
Thanks for the suggestion, Bruce. I'll run 8 different subjects at once.
Take care,
John
2011/7/5 Bruce Fischl
Sorry, that won't help a single subject much, although the
Hi Bruce,
Thanks for the suggestion, Bruce. I'll run 8 different subjects at once.
Take care,
John
2011/7/5 Bruce Fischl
> Sorry, that won't help a single subject much, although there are options to
> run the hemis in parallel. You can run multiple subjects at the same time,
> which is what we
Sorry, that won't help a single subject much, although there are options to run
the hemis in parallel. You can run multiple subjects at the same time, which is
what we usually do. Or you can use cuss
On Jul 5, 2011, at 5:11 PM, John Drozd wrote:
> Hi Bruce,
>
> Okay, thank you. I understand
Hi Bruce,
Okay, thank you. I understand and can see that to do an accurate job, the
pipeline must be complicated.
I have eight processors on my linux desktop computer.
Maybe some parts of recon-all are multi-threaded which could speed things up
for me :-)
Thank you,
John
2011/7/5 Bruce Fischl
sorry, but the majority of the time is required. We're working to speed
things up, but it is complicated software with multiple nonlinear warps,
segmentation procedures, etc
Bruce
On Tue, 5 Jul 2011, John Drozd wrote:
Hi Bruce and Pedro,
Thank you both for sending me your suggestions.
Hi Bruce and Pedro,
Thank you both for sending me your suggestions.
Just to let you know, because my .dcm (dicom) files had a space and two dots
in the filenames:
(e.g. "2008_12_08.ek -0035-0001-1.dcm" )
(and using quotes around the file name or "\ " within the filename without
the quotes did
recon-all \
-i \
-s \
-sd \
-all
cheers
Bruce
On Tue, 5 Jul 2011, John Drozd wrote:
Hi,
I am running freesurfer on 64 bit Fedora 10 linux.
I am using version: freesurfer-Linux-centos4_x86_64-stable-pub-v4.3.0.
Can anyone point me to a reference web page l
http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferBeginnersGuide
On Tue, Jul 5, 2011 at 13:14, John Drozd wrote:
> Hi,
>
> I am running freesurfer on 64 bit Fedora 10 linux.
> I am using version: freesurfer-Linux-centos4_x86_64-stable-pub-v4.3.0.
> Can anyone point me to a reference web page l
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