s!
> Jenifer
>
> -Original Message-
> From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
> Sent: Monday, March 24, 2014 2:44 PM
> To: Juranek, Jenifer
> Cc: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] major lobes
>
> what version of FS do you have and
Subject: Re: [Freesurfer] major lobes
what version of FS do you have and what is your platform?
doug
On 03/24/2014 02:34 PM, Juranek, Jenifer wrote:
>
> Hi Doug,
>
> I recently saw your solution to a reported problem with grabbing StrictLobes
> WM & GM (posted on the Freesurf
what version of FS do you have and what is your platform?
doug
On 03/24/2014 02:34 PM, Juranek, Jenifer wrote:
>
> Hi Doug,
>
> I recently saw your solution to a reported problem with grabbing StrictLobes
> WM & GM (posted on the Freesurfer forum 12/04/2013; thread title= major
> lobes).
> I hav
Hi Doug,
I recently saw your solution to a reported problem with grabbing StrictLobes WM
& GM (posted on the Freesurfer forum 12/04/2013; thread title= major lobes).
I have successfully grabbed the StrictLobes WM, but I am having trouble with
the GM.
According to the forum (posted 12/04/2013),
Thanks a lot! it worked :)
-M
On 12/04/2013 11:52 AM, Douglas N Greve wrote:
>
> mri_annotation2label --subject P2 --hemi lh --ctab new_ColorTable.txt
> --lobesStrict freeSurfer_Results/P2/label/lh.freeSurfer_lobes.annot
___
Freesurfer mailing list
Fr
I've put a new version of mri_annotation2label here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_annotation2label
This is for centos 6. If that does not work for you, let me know what
your platform is
doug
On 12/03/2013 12:28 PM, Mojdeh Zamyadi wrote:
> Thanks Doug! maybe
Thanks Doug! maybe I'm making this too complicated! What I want is to
know which label (number) corresponds to each of the main lobes.
Right now my freeSurfer_lobes.nii.gz image has lables in the range of
0-100's (which is WM if not mistaken), and then labels in the range of
1000-1035 for the le
The commands look right and it sounds like you might have the right
result. What do you mean you are getting a detailed WM + GM
segmentation? If you just load freeSurfer_lobes.nii.gz into tkmedit, the
label names will be all messed up because you don't have the proper
color table, but you shou
Hi Jenifer,
We are currently working on a lobar/vermis/hemisphere labeling of the
cerebellum that we intend to add to the automated segmentation procedures.
Once we are done with the manual labeling, we will test the automated
procedures compared to those labels. We expect that building these
Nikos Makris and friends have two papers on this:
Journal of Cognitive Neuroscience (2003) 15:4, 584-599
Neuroimage (2005) 25, 1146-1160
Juranek, Jenifer wrote:
Is there any interest in parcellation of the cerebellum into its major
regions: corpus medullare, anterior, superior-posterior,
in
t; Rostral Anterior (Frontal)
> >> Caudal Anterior (Frontal)
> >> Posterior (Parietal)
> >> Isthmus (Parietal)
> >>
> >> Best,
> >>
> >> rahul
> >>
> >>> Hi Bruce,
> >>>
> >>> Are you saying
D]
Cc: [EMAIL PROTECTED]
Subject: Re: [Freesurfer] major lobes - frontal, parietal occipital and
temporal
Hi Lee,
sorry, not really - we've never done a lobar parcellation, and I don't
think the existing units break down that way.
Bruce
On Sat, 14 Apr 2007
[EMAIL PROTECTED] wrote:
I kn
he LUT.txt file?
> >
> > Lee
> >
> > -Original Message-
> > From: Bruce Fischl [mailto:[EMAIL PROTECTED]
> > Sent: Saturday, April 14, 2007 2:21 PM
> > To: [EMAIL PROTECTED]
> > Cc: [EMAIL PROTECTED]
> > Subject: Re: [Freesurfer] major lobes
file?
> >
> > Lee
> >
> > -Original Message-
> > From: Bruce Fischl [mailto:[EMAIL PROTECTED]
> > Sent: Saturday, April 14, 2007 2:21 PM
> > To: [EMAIL PROTECTED]
> > Cc: [EMAIL PROTECTED]
> > Subject: Re: [Freesurfer] major lobes - fro
April 14, 2007 2:21 PM
> To: [EMAIL PROTECTED]
> Cc: [EMAIL PROTECTED]
> Subject: Re: [Freesurfer] major lobes - frontal, parietal occipital and
> temporal
>
> Hi Lee,
>
> sorry, not really - we've never done a lobar parcellation, and I don't
> think the exis
ECTED]
Subject: Re: [Freesurfer] major lobes - frontal, parietal occipital and
temporal
Hi Lee,
sorry, not really - we've never done a lobar parcellation, and I don't
think the existing units break down that way.
Bruce
On Sat, 14 Apr 2007
[EMAIL PROTECTED] wrote:
> I know that I
file?
Lee
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Saturday, April 14, 2007 2:21 PM
To: [EMAIL PROTECTED]
Cc: [EMAIL PROTECTED]
Subject: Re: [Freesurfer] major lobes - frontal, parietal occipital and
temporal
Hi Lee,
sorry, not really - we've never done a lobar parc
Hi Lee,
sorry, not really - we've never done a lobar parcellation, and I don't
think the existing units break down that way.
Bruce
On Sat, 14 Apr 2007
[EMAIL PROTECTED] wrote:
I know that I could go thru the
FreeSurferColorLUT.txt
file to get codes for different cortical structures.
Is the
18 matches
Mail list logo
