mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Monday, January 30, 2017 at 10:48 AM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks again for the help! And congrats on tracula — it's a great tool, and
vard.edu>>
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks again for the help! And congrats on tracula — it's a great tool, and the
online support is really good :)
I do have a follow-up question, if that’s OK. I’m currently running bedpost,
and it gives
se>]
Sent: Thursday, January 26, 2017 3:29 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks so much for your help! Sorry for the delay in replying -- just wanted to
make sure the was problem was indeed solved. Since I'm using a ser
Sent: Thursday, January 26, 2017 3:29 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks so much for your help! Sorry for the delay in replying -- just wanted to
make sure the was problem was indeed solved. Since I'm using a server for which
eesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>]
on behalf of Bárbara Avelar Pereira
[barbara.avelar.pere...@ki.se<mailto:barbara.avelar.pere...@ki.se>]
Sent: Friday, January 20, 2017 7:00 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitu
2017 7:00 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks so much for your quick reply. I've only tried version 6.0 to determine
whether the error was possibly version-related, but that doesn’t seem to be the
case… I'm actually wo
Hi Anastasia,
Thanks so much for your quick reply. I've only tried version 6.0 to determine
whether the error was possibly version-related, but that doesn’t seem to be the
case… I'm actually working with version 5.3 so I'll send attach the
trac-all.local-copy for that if that’s OK. Once again,
Hi Barbara - If you take out the "set baselist" part, you'll run the
cross-sectional TRACULA stream, i.e., analyze each time point independently. So
you want to leave that in to use the longitudinal TRACULA stream.
The base template itself (i.e., the median of the T1s of the time-points) may
no
Hi Emad - I believe that it's not finding your freesurfer recons. They
should be under the $SUBJECTS_DIR and have the same names for time points
and longitudinal template as what is under your tracula output directory
(if the latter is different from SUBJECTS_DIR).
Best,
a.y
On Fri, 1 Apr 2
Hi Emad - The error happens at the very beginning, so I'm wondering if
something went wrong in the previous steps, before -path. Can you please
send me the entire trac-all.log of one of your subjects? Thank you!
a.y
On Wed, 30 Mar 2016, Emad Ahmadi wrote:
Hi Anastasia,
I hope you’re enjoy
Hi Francesco - Please attach your dmrirc, and also the tracula log file of
your subject (scripts/trac-all.log). It's hard to guess what went wrong
without looking at the complete output.
Thanks,
a.y
On Thu, 29 Jan 2015, Francesco Siciliano wrote:
Hi,
I have been unsuccessful in getting lon
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