Re: [Freesurfer] lobes volume (WM and GM)

2017-09-22 Thread Douglas N Greve
https://www.ncbi.nlm.nih.gov/pubmed/19027860 On 09/22/2017 10:11 AM, Gonzalo Rojas Costa wrote: > Hi Douglas: > >I am looking for that paper, but I couldn't found it... Which is it ? > >Sincerely, > > > Gonzalo Rojas Costa > Gonzalo Rojas Costa > Laboratory for Advanced Medical Image Proc

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-22 Thread Gonzalo Rojas Costa
Hi Douglas: I am looking for that paper, but I couldn't found it... Which is it ? Sincerely, Gonzalo Rojas Costa Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-21 Thread Douglas N Greve
No, not for lobe volume. Have you seen the original wmparc paper? On 09/20/2017 04:53 PM, Gonzalo Rojas Costa wrote: > Hi Douglas: > >I am looking for papers that used the volume of each lobe computed > using freesurfer, but I couldn't found it... Do you know any?... > >Sincerely, > > >

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-20 Thread Gonzalo Rojas Costa
Hi Douglas: I am looking for papers that used the volume of each lobe computed using freesurfer, but I couldn't found it... Do you know any?... Sincerely, Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-20 Thread Douglas N Greve
We did not have a strong reason, just that it seemed to give maps that looked reasonable On 09/20/2017 04:42 PM, Gonzalo Rojas Costa wrote: > Hi Douglas: > >Why you specified 5mm as the default value for the --wmparc-dmax > option in mri_aparc2aseg command? > >Sincerely, > > > Gonzalo Ro

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-20 Thread Gonzalo Rojas Costa
Hi Douglas: Why you specified 5mm as the default value for the --wmparc-dmax option in mri_aparc2aseg command? Sincerely, Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-14 Thread Gonzalo Rojas Costa
Hi Douglas: By removing --rip-unknown I got the same results... Why ?... Sincerely, Gonzalo Rojas Costa > Date: Tue, 12 Sep 2017 12:33:11 -0400 > From: Douglas N Greve > Subject: Re: [Freesurfer] lobes volume (WM and GM) > To: freesurfer@nmr.mgh.harvard.edu > Message-ID:

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-12 Thread Bruce Fischl
Hi Gonzalo I don't think "wm for a lobe" is well-defined once you get into the deep wm Bruce On Tue, 12 Sep 2017, Gonzalo Rojas Costa wrote: Hi: I need the complete WM volume for each lobe... not only the WM up to 5mm beneath the lobes (default value) or 20 mm... Sincerely, Gonzalo Roja

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-12 Thread Douglas N Greve
Try removing the --rip-unknown On 09/12/2017 11:09 AM, Gonzalo Rojas Costa wrote: > Hi: > >I created the following script (for freesurfer 5.3.0) to compute the > lobes volume (including GM and WM). > >mri_annotation2label --subject pac --hemi rh --lobesStrict lobulos > --seg lobulos --sta