Re: [Freesurfer] lobes gyrification

2014-08-11 Thread Marie Schaer
lto:marie.sch...@unige.ch> To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>; mellyd...@outlook.com<mailto:mellyd...@outlook.com> Subject: Re: [Freesurfer] lobes gyrification Date: Mon, 21 Jul 2014 18:36:23 + Hi Melly, The LGI has the same format as

Re: [Freesurfer] lobes gyrification

2014-08-11 Thread melinda dora
ch To: freesurfer@nmr.mgh.harvard.edu; mellyd...@outlook.com Subject: Re: [Freesurfer] lobes gyrification Date: Mon, 21 Jul 2014 18:36:23 + Hi Melly, The LGI has the same format as the thickness files, so you can extract them using mris_anatomical_stats (providing you have your own annot

Re: [Freesurfer] lobes gyrification

2014-07-21 Thread Marie Schaer
Hi Melly, The LGI has the same format as the thickness files, so you can extract them using mris_anatomical_stats (providing you have your own annotation). The command will look something like: mris_anatomical_stats -a $SUBJ/label/YOUR_ANNOT -t $SUBJ/surf/?h.pial_lgi -f $SUBJ/stats/OUTPUT_F