Re: [Freesurfer] hipposubfields and data

2013-05-28 Thread Joshua Lee
I think the resolution is important. The CA1 subfield is only about 2-2.5 mm thick after all. If this is a feature request thread now, let me add that it would be nice if the actual training algorithm was integrated into Freesurfer. There is a lot of disagreement about the most appropriate subfiel

Re: [Freesurfer] hipposubfields and data

2013-05-28 Thread Juan Eugenio Iglesias
Hi Josh, as of now, it uses nu.mgz, which is conformed and bias field corrected with N3. Koen, do you think we should add a flag to change this? The algorithm is pretty resolution-independent, and could certainly benefit from higher-res data. Cheers, /Eugenio On Tue, 2013-05-28 at 13:34 -0700, Jo