It is whole-brain minus cerebellum and brain stem. But the current
release has a bug and should not be trusted. See the email I sent out
last week or look at the Release Notes page on our wiki for how to
download a patch and regenerate the results.
doug
Rashmi Singh wrote:
> Thanks so much Doug
You'll have to run it on each subject. Easy to do with a script. You can
then cat the data into one fine (they are just text files).
doug
Rashmi Singh wrote:
> Thanks Doug,
> Do I need to run the following for each subject or can is there a way to
> run it with input for all my subjects in one
oh, sorry, I do remember now that we took that out (I think we put it
back in for the next release). The work-around is to run
mri_binarize --i brain.mgz --min 0.1 --count count.dat --o junk.mgh
You can delete junk.mgh. The file count.dat will have info about the
number of voxels in the bra
In the aseg.stats file there is a value for the whole brain volume.
doug
Rashmi Singh wrote:
> I would like know how can I get the sub-cortical volumes normalized it to
> the whole brain.
> Thanks,
> Rashmi.
>
> On 2/28/12 3:14 PM, "Douglas N Greve" wrote:
>
>
>> No, it does not. All volumes
No, it does not. All volumes are volumes in native anatomical space.
doug
Rashmi Singh wrote:
> Hello.
> I am using FreeSurfer to generate subcortical volumes and cortical
> thickness for my subjects.
> Does FreeSurfer normalizes the subcortical volumes to the whole brain
> volume for each sub
