Re: [Freesurfer] excluding labels

They are different analyses. If you want to use the stats file, then you'll need to edit the parcellation/annotation to remove the offending areas. I think you can do this in FreeView, but someone else will have to guide you because I've never done it. doug On 10/14/2014 11:57 AM, Adam, Ruth

Re: [Freesurfer] excluding labels

Hi,Would that make a difference?I would like to use the stats file, unless you recommend otherwise. Thanks!Best,ruthiOn 14 Oct 2014, at 17:43, Douglas N Greve wrote:Which cortical thickness measure? The value in the stats file or the values in the map prior to voxel-wise

Re: [Freesurfer] excluding labels

Which cortical thickness measure? The value in the stats file or the values in the map prior to voxel-wise analysis? On 10/10/2014 03:57 AM, Adam, Ruth wrote: > Hi, > > I would like to exclude areas which were incorrectly segmented and > could not be corrected after editing and re-running reco

Re: [Freesurfer] excluding labels

Hi,I would like to exclude areas which were incorrectly segmented and could not be corrected after editing and re-running recon-all from the cortical thickness measure. Thank you again.Best,ruthiOn 09 Oct 2014, at 19:57, Douglas Greve wrote: What analys

Re: [Freesurfer] excluding labels

What analysis? On 10/9/14 11:35 AM, Adam, Ruth wrote: Hi all, Would be great is someone can tell me how to exclude user-defined labels from the analysis. As far as I understand after creating all labels, mris_label2annot with a custom colortable should be used. -Is this correct or is there