Re: [Freesurfer] error message while using autorecon1

2017-07-05 Thread Hoopes, Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Buckless, Colleen Sent: Wednesday, July 05, 2017 2:30 PM To: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] error message while using autorecon1 I ran "which nu_correct" and it says command no

Re: [Freesurfer] error message while using autorecon1

2017-07-05 Thread Buckless, Colleen
urfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Hoopes, Andrew Sent: Wednesday, July 05, 2017 2:05 PM To: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] error message while using autorecon1 After sourcing freesurfer, what comes up if you run the command "which nu_co

Re: [Freesurfer] error message while using autorecon1

2017-07-05 Thread Hoopes, Andrew
on behalf of Buckless, Colleen Sent: Wednesday, July 05, 2017 1:36 PM To: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] error message while using autorecon1 Hi Andrew, The output list includes nu_correct. Thanks, Colleen -Original Message- From: freesurfer-boun...

Re: [Freesurfer] error message while using autorecon1

2017-07-05 Thread Buckless, Colleen
7; Subject: Re: [Freesurfer] error message while using autorecon1 Hi Colleen, If you source freesurfer, and run: ls $FREESURFER_HOME/mni/bin It should output a list of mni tools, including nu_correct. Is this what you see? There's a possibility that your mni sub-directory isn&#x

Re: [Freesurfer] error message while using autorecon1

2017-07-05 Thread Hoopes, Andrew
Hi Colleen, If you source freesurfer, and run: ls $FREESURFER_HOME/mni/bin It should output a list of mni tools, including nu_correct. Is this what you see? There's a possibility that your mni sub-directory isn't sourced. Andrew From: freesurfer-boun...@nmr